osl_ephys.source_recon.rhino.fsl_utils#

Wrappers for fsleyes.

Functions#

`setup_fsl`(directory)	Setup FSL.
`check_fsl`()	Check FSL is installed.
`fsleyes`(image_list)	Displays list of niftii's using external command line call to fsleyes.
`fsleyes_overlay`(background_img, overlay_img)	Displays overlay_img and background_img using external command line call to fsleyes.

osl_ephys.source_recon.rhino.fsl_utils.setup_fsl(directory)[source]#

Setup FSL.

osl_ephys.source_recon.rhino.fsl_utils.check_fsl()[source]#: Check FSL is installed.

osl_ephys.source_recon.rhino.fsl_utils.fsleyes(image_list)[source]#

Displays list of niftii’s using external command line call to fsleyes.

Parameters:: image_list (string | tuple of strings) – Niftii filenames or tuple of niftii filenames

Examples

fsleyes(image) fsleyes((image1, image2))

osl_ephys.source_recon.rhino.fsl_utils.fsleyes_overlay(background_img, overlay_img)[source]#

Displays overlay_img and background_img using external command line call to fsleyes.

Parameters: